Sequence correlations shape protein promiscuity.

نویسندگان

  • David B Lukatsky
  • Ariel Afek
  • Eugene I Shakhnovich
چکیده

We predict analytically that diagonal correlations of amino acid positions within protein sequences statistically enhance protein propensity for nonspecific binding. We use the term "promiscuity" to describe such nonspecific binding. Diagonal correlations represent statistically significant repeats of sequence patterns where amino acids of the same type are clustered together. The predicted effect is qualitatively robust with respect to the form of the microscopic interaction potentials and the average amino acid composition. Our analytical results provide an explanation for the enhanced diagonal correlations observed in hubs of eukaryotic organismal proteomes [J. Mol. Biol. 409, 439 (2011)]. We suggest experiments that will allow direct testing of the predicted effect.

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عنوان ژورنال:
  • The Journal of chemical physics

دوره 135 6  شماره 

صفحات  -

تاریخ انتشار 2011